InMoose
Features
Batch Effect Correction Tools
Example Datasets
Differential Expression Analysis
API
deseq2
Quick start
Input data
Differential expression analysis
Exploring and exporting results
Multi-factor designs
Variations to the standard workflow
Theory behind DESeq2
References
Code documentation
inmoose.deseq2.DESeqDataSet
DESeqDataSet
inmoose.deseq2.DESeqDataSet.DESeqDataSet.__init__
inmoose.deseq2.DESeqDataSet.DESeqDataSet.counts
inmoose.deseq2.DESeqDataSet.DESeqDataSet.estimateDispersions
inmoose.deseq2.DESeqDataSet.DESeqDataSet.estimateSizeFactors
inmoose.deseq2.DESeqDataSet.DESeqDataSet.results
inmoose.deseq2.DESeqDataSet.DESeqDataSet.setDispFunction
inmoose.deseq2.DESeqDataSet.DESeqDataSet.design
inmoose.deseq2.DESeqDataSet.DESeqDataSet.dispersions
inmoose.deseq2.DESeqDataSet.DESeqDataSet.dispersionFunction
inmoose.deseq2.DESeqDataSet.DESeqDataSet.dispersions
inmoose.deseq2.DESeqDataSet.DESeqDataSet.normalizationFactors
inmoose.deseq2.DESeqDataSet.DESeqDataSet.sizeFactors
inmoose.deseq2.results.DESeqResults
inmoose.deseq2.DESeq
inmoose.deseq2.collapseReplicates
inmoose.deseq2.estimateBetaPriorVar
inmoose.deseq2.estimateDispersionsFit
inmoose.deseq2.estimateDispersionsGeneEst
inmoose.deseq2.estimateDispersionsMAP
inmoose.deseq2.estimateDispersionsPriorVar
inmoose.deseq2.estimateSizeFactorsForMatrix
inmoose.deseq2.results.filtered_p
inmoose.deseq2.makeExampleDESeqDataSet
inmoose.deseq2.nbinomLRT
inmoose.deseq2.nbinomWaldTest
inmoose.deseq2.results.p_adjust
inmoose.deseq2.replaceOutliers
inmoose.deseq2.varianceStabilizingTransformation
inmoose.deseq2.Hmisc.wtd_quantile
Consensus Clustering
Cohort Quality Control
edgepy
limma
sim
utils
InMoose
deseq2
inmoose.deseq2.DESeqDataSet
inmoose.deseq2.DESeqDataSet.DESeqDataSet.design
View page source
inmoose.deseq2.DESeqDataSet.DESeqDataSet.design
property
DESeqDataSet.
design
design matrix