sim

This module is a partial reimplementation of the R Bioconductor splatter package. Its main feature is sim_rnaseq(), a function to generate simulated RNA-Seq or single-cell RNA-Seq data based on the Splat model described in [Zappia2017].

sim_rnaseq(nb_genes, nb_samples[, batch, ...])

Simulate (sc)RNASeq data.

References

[Zappia2017]

L. Zappia, B. Phipson, A. Oshlack. 2017. Splatter: simulation of single-cell RNA sequencing data. Genome Biology 18(174). doi:10.1186/s13059-017-1305-0