Index

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__init__() (inmoose.edgepy.DGEList method) (inmoose.utils.Factor method)

A

addPriorCount() (in module inmoose.edgepy) adjustedProfileLik() (in module inmoose.edgepy)

airway() (in module inmoose.data.airway) AveLogCPM (inmoose.edgepy.DGEList attribute) aveLogCPM() (in module inmoose.edgepy)

C

common_dispersion (inmoose.edgepy.DGEList attribute)

counts (inmoose.edgepy.DGEList attribute)

D

designAsFactor() (in module inmoose.edgepy) DGEList (class in inmoose.edgepy)

dispCoxReid() (in module inmoose.edgepy) dispCoxReidInterpolateTagwise() (in module inmoose.edgepy)

E

estimateGLMCommonDisp() (in module inmoose.edgepy)

estimateGLMTagwiseDisp() (in module inmoose.edgepy)

F

Factor (class in inmoose.utils)

G

genes (inmoose.edgepy.DGEList attribute)

glmFit() (in module inmoose.edgepy)

M

mglmLevenberg() (in module inmoose.edgepy) mglmOneGroup() (in module inmoose.edgepy)

mglmOneWay() (in module inmoose.edgepy) movingAverageByCol() (in module inmoose.edgepy)

N

nbinomDeviance() (in module inmoose.edgepy)

O

offset (inmoose.edgepy.DGEList attribute)

P

pasilla() (in module inmoose.data.pasilla) predFC() (in module inmoose.edgepy)

pycombat_norm() (in module inmoose.pycombat) pycombat_seq() (in module inmoose.pycombat)

R

rnbinom() (in module inmoose.utils)

S

samples (inmoose.edgepy.DGEList attribute) sim_rnaseq() (in module inmoose.sim)

splitIntoGroups() (in module inmoose.edgepy) systematicSubset() (in module inmoose.edgepy)

T

tagwise_dispersion (inmoose.edgepy.DGEList attribute)

trended_dispersion (inmoose.edgepy.DGEList attribute)

V

validDGEList() (in module inmoose.edgepy)